2067: Isolation: Japan seals herself off from the eyes of the world in the face of unilateral international policy setting strict limits on the use of robotic technology. The island nation exists only behind a veil of seclusion. No soul shall enter. No soul shall leave. 2077: Revelation: The veil is breached. Japan is infiltrated by agents of the organization S.W.O.R.D., a fighting force operating outside of the protection of the United States and her allies. Their mission: Determine if the Japanese are developing banned robotic bio-technology, forbidden due to its threat to humankind. In the battle between machine and man, humanity stands to suffer most.

Natsu Dragneel and his friends travel to the island Kingdom of Stella, where they will reveal dark secrets, fight the new enemies and once again save the world from destruction.

The story takes place in 19th century Europe, and revolves around John Watson. He is scouted by the government to become a secret agent. However, Watson lives in a world where "Frankensteins"—human corpses that are re-purposed with a false soul in order to use them as laborers—are used to improve industrial development.

Isabella, the daughter of the noble York family, is enrolled in an all-girls academy to be groomed into a dame worthy of nobility. However, she has given up on her future, seeing the prestigious school as nothing more than a prison from the outside world. Her family notices her struggling in her lessons and decides to hire Violet Evergarden to personally tutor her under the guise of a handmaiden. At first, Isabella treats Violet coldly. Violet seems to be able to do everything perfectly, leading Isabella to assume that she was born with a silver spoon. After some time, Isabella begins to realize that Violet has had her own struggles and starts to open up to her. Isabella soon reveals that she has lost contact with her beloved younger sister, whom she yearns to see again. Having experienced the power of words through her past clientele, Violet asks if Isabella wishes to write a letter to Taylor. Will Violet be able to help Isabella convey her feelings to her long-lost sister?

A warrant’s been issued for an arrest but this time, it’s not for Lupin. Authorities are after Inspector Zenigata as they suspect Pops has been in cahoots with the master thief all along. In an effort to vouch for Zenigata’s innocence, Lupin is challenged to steal the curious Time Crystal. As Lupin and his gang go after the famed diamond he’s confronted with the unexpected betrayal of his most trusted partner.