Set in the early 24th century against the backdrop of the city of Neo Venezia on the planet Mars. No longer the barren red planet, Mars has been flooded, inhabited and is something of a tourist hub for those looking for rest, relaxation and a gondola ride – the primary mode of travel in Neo Venezia. The Undines are professional gondoliers, tour guides for the people passing through. Akari Mizunashi is an Undine in training and this is a piece of her story.

The time is 972 A.D. in Kyoto, the capital of ancient Japan. Kyoto is becoming a corrupt and run-down city; selfish samurai and onmyoji, who care only about gaining political power are everywhere. To make matters worse the city is suffering from famine and widespread disease. Unable to ignore the condition of the city any longer, the Imperial Court decides to send Minamoto no Raiko, a famous samurai well-known for his archery skills, to recover a legendary gem said to hold mysterious power to save the world. However Raiko also falls ill to disease. Instead his youngest sister, Hikaru, decides secretely to make the journey in his place. Hikaru meets many people, and has many adventures while on her trip for the legendary gem.

Takao Taniguchi was the captain & pitcher of his junior high school's baseball team, but after suffering a fractured finger during a game Takao enters Sumitani High School as a fan and not a player. Even though Takao joins the soccer team and shows potential, he still has a great love for baseball and still umpires games in secret until his coach hears of this and gets angered, forcing Takao to leave the team. At the recommendation of the soccer team captain, Takao joins the Sumitani baseball team... Unfortunately, the team is notorious for losing big games due to their inexperience.

Rai wakes up from 820-years long sleep and starts his new life as a student in a high school founded by his loyal servant, Frankenstein. But his peaceful days with other human students are soon interrupted by mysterious attackers known as the "Unions".

Tomoya Okazaki is a third year high school student resentful of his life. His mother passed away from a car accident when he was younger, causing his father to resort to alcohol and cigarettes. This results in fights between the two until Tomoya's shoulder is injured in a fight. Since then, Tomoya has had distant relationships with his father, causing him to become a delinquent over time. While on a walk to school, he meets a strange girl named Nagisa Furukawa who is a year older, but is repeating due to illness. Due to this, she is often alone as most of her friends have moved on. The two begin hanging out and slowly, as time goes by, Tomoya finds his life shifting in a new direction.

Shinichiro is a student living in what would be a dream come true for most high school boys, but for him is mostly a frustration. A well liked girl in school named Hiromi has lived in his house for a year along with his family. Her father was a close friend of the family, and when he died they immediately took her in. She is popular and well liked, always smiles, is talented in sports- but Shinichiro knows there must be tears inside her. Having an artistic tendency, he makes watercolours of her and thinks about wishing to ease her tears. Yet he cannot bring up the nerve to talk to her even in his own home. She, too, is quiet and withdrawn in their house, quite unlike at school. Shinichiro is also distracted by teasing from his friend Nobuse for watching Hiromi from afar, a curse of bad luck from a strange girl named Noe, and being forced to perform Muhiga dancing. By helping Noe he hopes to ease his own problems, yet he seems to have difficulty helping himself.

Hakuoro has lost his memory after succumbing to serious injuries. But thanks to an elderly woman and her granddaughter Eruruu, he is nursed back to health. His face is covered by a strange irremovable mask and he occasionally sees beastly visions. Eruruu now cares for him as he becomes accustomed to the village and its inhabitants, who all bear strange ears (the women also have tails). Though these people venerate the forces of nature, desecration of an altar forces them to take drastic measures to preserve their lives from the wrath of Mutikapa-sama, guardian of the forest.

In the future when technological enhancements and robotics are a way of life, Major Motoko Kusanagi and Section 9 take care of the jobs that are too difficult for the police. Section 9 employs hackers, sharpshooters, detectives and cyborgs all in an effort to thwart cyber criminals and their plans to attack the innocent.

While hanging out on the roof of her school, Nao Ueshima discovers a flock of flying cats. In her haste to snap a picture, Nao tumbles over the side of the building. But instead of plummeting to her doom, Nao is guided by an unseen force that allows her to land safely on her feet. Determined to unlock the secrets of the flying cats and the identity of her rescuer, Nao soon learns that not only is one of her teachers able to control the wind, but he can also teach others to control it, too!